Welcome to stdvoidsim’s documentation!

stdvoidsim is a library of population genetic simulation models for Lovecraftian entities and eldritch horrors, built on the stdvoidsim framework.

Contents:

• Introduction
  • First steps
  • Citations
  • Licence and usage
• Installation
  • Requirements
  • Conda
  • Pip
  • Running the CLI
• Catalog
  • Outer Gods & Great Old Ones
  • Servitor Races & Engineered Species
  • Ancient Civilizations
  • Amphibious & Aquatic
  • Subterranean Horrors
  • Dreamlands Creatures
  • Interdimensional & Temporal
  • Arctic & Desert
  • Human-Adjacent Horrors
  • Generic models
• Tutorials
  • Running stdvoidsim with the command-line interface (CLI)
  • Running stdvoidsim with the Python interface (API)
  • Example analyses with stdvoidsim
• Command-line options
  • Positional Arguments
  • Named Arguments
  • msprime specific parameters
  • SLiM specific parameters
  • Sub-commands
• API
  • Quick reference
  • Species definitions
  • Demographic Models
  • Gene conversion and bacterial recombination
  • Selection and DFEs
  • Selection and sweeps
  • Generic models
  • Simulation Engines
• Development
  • Installation
  • GitHub workflow
  • Adding a new species
  • Adding a new demographic model
  • Adding a recombination/genetic map or annotation
  • Lifting over a recombination/genetic map
  • Adding a DFE model
  • Coding standards
  • Naming conventions
  • Unit tests
  • Code Coverage
  • Documentation
  • Making a new release
• Changelogs
  • Upcoming
  • [0.3.0] - 2025-03-18
  • [0.2.1a] - 2024-07-06
  • [0.2.0] - 2022-11-01
  • [0.1.2] - 2020-05-29
  • [0.1.1] - 2020-01-02
  • [0.1.0] - 2019-12-18

Indices and tables

• Index

• Module Index

• Search Page