Index

_

_MsprimeEngine (class in stdvoidsim.engines)

_SLiMEngine (class in stdvoidsim.slim_engine)

A

add_dfe() (stdvoidsim.Contig method) add_single_site() (stdvoidsim.Contig method)

Annotation (class in stdvoidsim) asdict() (stdvoidsim.Population method) assert_valid() (stdvoidsim.Citation method)

B

because() (stdvoidsim.Citation method)

C

Chromosome (class in stdvoidsim) Citation (class in stdvoidsim)

clear_dfes() (stdvoidsim.Contig method) Contig (class in stdvoidsim)

D

DemographicModel (class in stdvoidsim) description (stdvoidsim.engines._MsprimeEngine attribute) (stdvoidsim.slim_engine._SLiMEngine attribute)

DFE (class in stdvoidsim) dfe_breakpoints() (stdvoidsim.Contig method) download() (stdvoidsim.Annotation method)

E

Engine (class in stdvoidsim)

F

fetch_bibtex() (stdvoidsim.Citation method)

from_data() (stdvoidsim.Genome static method)

G

Genome (class in stdvoidsim) get_annotations() (stdvoidsim.Species method) get_chromosome() (stdvoidsim.Genome method) get_chromosome_annotations() (stdvoidsim.Annotation method) get_contig() (stdvoidsim.Species method) get_default_engine() (in module stdvoidsim)

get_demographic_model() (stdvoidsim.Species method) get_dfe() (stdvoidsim.Species method) get_engine() (in module stdvoidsim) get_sample_sets() (stdvoidsim.DemographicModel method) get_samples() (stdvoidsim.DemographicModel method) get_species() (in module stdvoidsim) get_version() (stdvoidsim.Engine method)

I

id (stdvoidsim.engines._MsprimeEngine attribute) (stdvoidsim.slim_engine._SLiMEngine attribute) is_cached() (stdvoidsim.Annotation method)

is_neutral (stdvoidsim.Contig property) (stdvoidsim.MutationType property) IsolationWithMigration (class in stdvoidsim)

M

mean_gene_conversion_fraction (stdvoidsim.Genome property) mean_mutation_rate (stdvoidsim.Genome property) mean_recombination_rate (stdvoidsim.Genome property)

merge() (stdvoidsim.Citation static method) mutation_types() (stdvoidsim.Contig method) MutationType (class in stdvoidsim)

O

origin (stdvoidsim.Contig property)

P

PiecewiseConstantSize (class in stdvoidsim)

Population (class in stdvoidsim)

R

range_gene_conversion_lengths (stdvoidsim.Genome property) recap_and_rescale() (stdvoidsim.slim_engine._SLiMEngine method)

register_engine() (in module stdvoidsim) register_qc() (stdvoidsim.DemographicModel method) (stdvoidsim.DFE method)

S

selective_sweep() (in module stdvoidsim) simulate() (stdvoidsim.Engine method) (stdvoidsim.engines._MsprimeEngine method) (stdvoidsim.slim_engine._SLiMEngine method)

Species (class in stdvoidsim) species_contig() (stdvoidsim.Contig static method)